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Containers sharing the same network (e.g. gluetun) should be able to see each other's by their hostnames, yet the VPN blocks that by its very nature, so... Check out https://github.com/qdm12/gluetun-wiki/blob/main/setup/inter-containers-networking.md
The trash guides say to avoid putting the arrs through VPN so I only put the torrent client through. Is that what you do?
I am in the UK TOO, I use docker on a nas and I only have gluetun and qbittorrent using vpn, all my other containers (sonarr, radarr, bazarr, prowlarr) are kt behind vpn. What do you mean prowlarr cannot access the indexers? If you use the setting for the indexer you should be able to try different URLs for it, check if any of them works.
Sorry don't quite follow. Are the arrs behind VPN on your setup? If I use Gluetun for Prowlarr then I can connect fine to the public trackers, but the information doesn't pass to Sonarr etc. Which makes sense to me, but I don't know how to work around it.
Edit: I've tried all of the alt URLs and still nada also unless it's behind VPN.
In my setup, only qbittorrent container is using the gluetun network, all other "arrs" are using bridge non-VPN connection (my ISP uses CGNAT and I have no need to access them from outside anyway). It may be my ISP does not block those indexers alternative URL's, my previous one didn't either though.